This makes no sense, since GR uses the stress-energy-momentum tensor as the source term of gravity; that tensor is a representation of mass and energy.
So is energy. Or momentum. Or potential. Or any number of other concepts in physics.
Actually, no. The scientific method only requires us to extract numerical predictions from the model as a whole, and then compare it to experiment and observation. The scientific method does not actually concern itself with the specific mechanisms of the model; you could, if you wanted to, write a model which explains gravity in terms of microscopic pink unicorns - so long as all predictions of that pink-unicorn explanation line up with experiment and observation, you'd have a valid model of gravity, until such time as a contradiction or a wrong prediction surfaces. The scientific method simply goes : Ask a question - formulate a hypothesis - extract predictions - test those against observation - analyse the outcome, and amend the hypothesis if necessary.
So far as predictions and observations go, GR does a pretty good job in explaining the effects of gravity.
As you know the Gravity Probe B measured the geodetic effect. Apparently Wellwisher doesn't know about this test for GR and spacetime geometry?