Cool stuff about random walks! Statistical mechanics always go a little over my head, but it's pretty cool that you can recover Anderson localization and the Born rule by just maximizing entropy over classical paths. Also, the plots are pretty, which is always one of my primary criteria for evaluating papers outside my field.
Back to the topic at hand, though, I think I may finally see your confusion. I certainly agree that solitons have information about both spins spread throughout all of space, but that's not enough. In fact, let's go a step further and consider the most powerful classical measurement possible: observe data that tells you the exact, pre-measurement state of
both particles, then apply some function to that data that outputs one of two outcomes. Such a measurement is
still not enough to violate Bell's inequality, because each observer only knows the
pre-measurement state of the particles. To reach quantum-mechanical levels of correlations, each measurement outcome needs to depend not only on the states of the particles, but also on what measurement the other observer chose to make. Solitons provide a clear mechanism for the former, but no mechanism for the latter, as far as I can tell.
Beyond that, I'm running up against the limits of how precisely I can explain why Bell's inequality applies to solitons. Bell's inequality (or at least, the two-particle version of it) requires measurements of spin at 45-degree angles to one another, so for me to get any more specific, you'll have to provide some model of solitons that supports more than two directions of spin. Otherwise, all I can say is that your arguments seem to stem from defining "locality" differently from Bell, and if you actually go through any proof of Bell's theorem, you'll never find any steps that stop being correct for solitons.
I didn't know they'd done Bell inequality violations with neutrons - nifty!
As for that link, Bryan Sanctuary seems to be a big fan of Joy Christian's work. In reading his blog, I think I've actually come to a better understanding of where Christian's primary error is. The math is obtuse enough that I can't say for sure, but I think that both authors are looking at direct correlations between spins, rather than correlations between
measurements of spins. By applying fancy models of the spins, they come up with more complicated formulas for spin-spin correlations, which can exceed Bell inequality bounds. But in doing so, they sacrifice the connection between their formulas and experimental results. In Bell inequality experiments, some physics leads to Alice's and Bob's binary measurement outcomes, which they write down in their lab notebooks. That's where the physics stops. To look for Bell inequality violations, they punch the numbers into Matlab and calculate a well-defined correlations function. Does that function really capture the correlations between the spins themselves? Maybe not, but Bell's theorem doesn't care, because it puts bounds on the correlation function as traditionally defined. That's what I meant before when I said that Bell's theorem is really about statistics, rather than physics.
(Addendum: I think the most convincing argument that Sanctuary is making this mistake comes near the top of post 009b, where he says Bell's original equation 1 is mistaken. He says that because spin can point in any direction, the functions A and B should not be restricted to having values of plus/minus one. But A and B are measurement outcomes, so they can only be plus/minus one by definition, independent of any physics.)