Misogyny is visible and it's quite palpable, in certain sects of various religions, but atheism seems to be having a problem with it, as well. How men are raised to view women by their parents/role models, usually is what creates the foundation of how they will treat women, as adults. Their personal experiences with women, and other social factors also play a role. I believe that most men who use religion to hurt women, would probably be hurting women if they were secularists. Religion becomes their catalyst, is all.
I don't necessarily liken misogyny to bold sexism, which is rampant in both religious and secular circles. Misogyny is about hatred,
a general disdain for women, and religion doesn't really teach that, as much as it promotes a blatant type of sexism. (which is wrong, but I'm just sharing the distinction) The media misuses the term ''misogyny'' to mean everything from women experiencing wage gap discrimination to sexual harassment. An easy way to remember the distinction is that not all sexists are misogynists, but all misogynists are sexists. Misogynists usually compete with women, and feel threatened by them. Some sexists might be like this, but definitely not all. I'd say serial rapists are misogynists, as well as Harvey Weinstein, as examples. Men who are both threatened by women, and seek to blame and hurt them, carry the main characteristics of a misogynist. I don't think misogynists can change their ways, but sexists can. (wow, sorry for the tangent)
It's important to remember, that ancient religious texts like the Bible, Torah and Qu'ran were all written during a time when the cultural norms were to treat women as second class citizens. That doesn't mean God ordained it. (which many people construe as to why God could be the ultimate misogynist)